Issue-Ref: 3478
Issue-Url: https://af3-developer.fortiss.org/issues/3478



Signed-off-by: Simon Barner <barner@fortiss.org>

- Remove private copy of JGraphT 0.9.0
- Use JGraph 1.2.0 copy exported by af3.exploration
- Port source code, e.g.
  - moved packages
  - DirectedGraph -> DefaultDirectedGraph
  - CycleFoundException -> IllegalArgumentException
  - DirectedSubgraph -> MaskSubgraph

Issue-Ref: 3478
Issue-Url: https://af3-developer.fortiss.org/issues/3478



Signed-off-by: Simon Barner <barner@fortiss.org>

Signed-off-by: Alexander Diewald <diewald@fortiss.org>

Signed-off-by: Alexander Diewald <diewald@fortiss.org>

* Add SuperSets to the transformation interface: The dependency handling is still missing.
* Transformation for generated partitions.
* Transformation for Partition to ExecutionUnit allocations.
* transformation for Task to Partition Allocations.
refs 3257

* The DSEInputParameter container is no longer used --> Remove.
* Remove several porting classes of the MOEA-based DSE.
refs 3200

Note: Due to the invasive changes, the MOEA-based DSE is currently non-functional. This intermediate commit is intended to separate the overall goal into smaller tasks.
refs 3254

refs 3254

* Exploration.alg:
  * Register the .alg plugin via an IStattup extension to avoid dependencies on this plugin.
  * Create a objective and a constraint evaluator that can handle DSML expressions.
  * Adjust the opt4j extensions.
  * Temporally introduce the MappingEncoding marker interface to support the DSML evaluators (--> allocation expressions).
  * Fix some minor bugs and warnings.
  * Move the porting utils to the alg plugin (previously in alg.ui).
  * Move the plot code to the alg plugin (previously in alg.ui) until the transition to the AF3 visualization framework is finished.
* Exploration.smt:
  * Create a backend implementation for the smt-based exploration.
  * Minor adjustments (I/O) to comply with the backend mechanism.
* Exploration:
  * Package renaming of the DSE backend mechanism.
  * Make the DSE backend mechanism independent of the eclipse extension mechanism.
  * Integrate the Exploration solution Classes in the EMF model.
  * Minor adjustments of the DSE backend API.
* Exploration.ui:
  * Add a combobox to select the DSE backend for the Deployment synthesis
  * Adjust the GUI backends to comply with the DSE backend interfaces.
refs 2939

Please fix your SVN configurations!

See https://af3-developer.fortiss.org/projects/autofocus3/wiki/Developer_Installation, Section "Initial Workspace Content Check-out", §6.

  - Bump plugin version to 2.11.0
  - Sync online help

- Dependency cleanup.